Psf.rar -
Ensure you also have a corresponding coordinate file ( .pdb or .dcd ).
Use a utility like WinRAR or 7-Zip to extract the .psf file from the archive. psf.rar
Quartets of atoms defining rotation around bonds. Ensure you also have a corresponding coordinate file (
In a NAMD configuration file, point to the extracted file: structure input.psf . In a NAMD configuration file, point to the
A "write-up" for psf.rar generally implies a technical report detailing the contents, purpose, and usage of a (PSF) archive, commonly used in molecular dynamics simulations. 1. Executive Summary
Explicit values for each atom's mass and partial charge, used by the force field to calculate physical interactions. Connectivity Tables: Bonds: Explicit pairs of atoms that are chemically bonded. Angles: Triplets of atoms forming specific bond angles.
If your software requires a different topology format (like GROMACS .top ), use tools like vmd or parmed to convert the extracted PSF.
